I’ve encountered a problem in retrieving my OD calibration file
I write the line:
py calibration/calibrate.py -a 192.168.1.2 -n lyoOD820 -f fitOD -t linear -p od_90, od_135
And I get an output with lists of lists for each holder and seemingly each arrangement of the vials during the calibration. But no graph. At the end of the output there is an error message: ‘ValueError: array must not contain infs or NaNs’. Looking at the numbers in the lists I noticed an odd pattern. I’ve attached a screenshot here. I’ve circled in red an empty list within the list of lists that moves position with each subsquent list. First it’s in the second position, next in the third, and so on. I don’t know if it’s an issue with the optics of a particular holder, or possibly an individual vial as it went around. In the first list of lists, it’s in the 2nd position which if it corresponds to vial 1 then that would have been one of my blank media vials. I’m thinking this empty list is the problem and creating a NaN situation.